Sentence examples for maximum parsimony using from inspiring English sources

First, Crandall [10] explored a single method (statistical parsimony) relative to maximum parsimony using an empirically generated data set from a known phylogeny of the bacteriophage T7 [11].

Separate runs examined the position of P. t. amoyensis in trees inferred by maximum parsimony using various combinations of tiger haplotypes: (1) ALT1, ALT, COR2, COR8, SUM8, TIG1; (2) ALT1, ALT, SUM8, TIG1; (3) AMO1, SUM8, TIG1.

After downloading I aligned them using MAFFT alignment [27] with default settings, concatenated them, then analyzed them with maximum parsimony using the PHYLIP 3.47 [28] software package (dnapars program) with default settings.

Ancestral haplotypes identified based on rooting probability [ 32, 33] and maximum parsimony using E. necator var.

Tree topology assessed by maximum parsimony (using Mega v3.1), was substantial similar with the NJ tree.

We also predicted the ancestral haplotype by maximum parsimony using E. necator var.

The ancestral states were reconstructed using the maximum parsimony approach, using marmoset (Callithrix jacchus) and D. yakuba as outgroup species.

1,000 bootstrap replicates were conducted on the data set using PAUP* 4.0b10 with maximum parsimony and using MEGA with neighbor-joining methods and the Poisson-corrected distance.

PAUP* was used to generate a maximum parsimony phylogeny using a heuristic search algorithm.

We also constructed maximum parsimony trees using only intron sequence or only exon sequence, and using sequence from three contiguous regions (bps 1-455, 456-910, and 911-1365).

The protein alignments were used to obtain the phylogenetic relationships through Maximum Parsimony (MP) using the software TNT [ 60].