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Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Maximum parsimony methods seek to reconstruct the tree that requires the fewest (i.e., most parsimonious) number of changes summed along all branches.
Maximum parsimony methods are related to cladistics, a very formalistic theory of taxonomic classification, extensively used with morphological and paleontological data.
Two genes, 5.8S and 28S in the nuclear rDNA repeats, were sequenced and a data set with 178 taxa analysed using neighbour-joining and maximum parsimony methods.
Phylogenetic relationships were obtained using the neighbor-joining and maximum parsimony methods within the MEGA 4.1 software [41].
Boostrap support (% of 1,000 bootstrap replicates) was calculated using the neighbor-joining, minimum evolution, and maximum parsimony methods.
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The phylogeny was inferred using the Maximum Parsimony method as described in the methods.
Figure 4 Phylogenetic tree based on tuf gene sequences of ChIF phytoplasma and related 17 phytoplasmas, constructed by the maximum parsimony method.
The phylogeny was inferred using the Maximum Parsimony method [42].
The evolutionary history of the yqi gene was inferred using the Maximum Parsimony method.
The evolutionary history was inferred using the flat-weighted Maximum Parsimony method.
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