Sentence examples for maximum pairwise sequence from inspiring English sources
Specifications of the full and stripped ITS sequence alignments are given in Table 2. Maximum pairwise sequence divergence was 13% for the full and 5% for the stripped alignment.
The subset, SCOP20, consists of all SCOP domains with 20% maximum pairwise sequence identity and includes 7074 sequences in total.
The subset, which we call SCOP40-v, consists of SCOP domain sequences, except those included in the validation set above, with 40% maximum pairwise sequence identity.
In the conserved core genome, genes within each of the 12 pfam families were very similar to each other, with a maximum pairwise sequence difference of 8% based on amino acid alignments with bl2seq.
This might be expected because MIQS was derived using a diverse set of proteins with 20% maximum pairwise sequence identity, although the relative entropy of MIQS is slightly higher than that of BLOSUM40 (0.2851).
The maximum pairwise sequence divergence within each MOTU, as well as the distance to the nearest neighbouring sequence belonging to a different MOTU, was calculated for all sequences of at least 500 bp using the Barcode Gap Analysis function in BOLD3 using the Kimura-2-parameter (K2P) distance model [ 49].
This result was similar to the maximum pairwise divergence of 101 VP4 sequences (46%) and slightly lower than that of VP1 sequences (54%) [28], [29].
The maximum pairwise identity of the sequences was 90% after the reduction, resulting in a final set of 575 positive and 685 negative sequence examples.
There were no abrupt or discordant regions of high divergence among the sperm whale mitogenomes, which would indicate inadvertent assembly of numt sequences (maximum pairwise divergence observed was 1.65% for tRNA-Lys: supplementary material S9, Supplementary Material online).
They all had very similar COI sequences, with maximum pairwise divergence of only 0.314%, forming haplotypes 1 3 and a well-supported monophyletic clade.
Finally the homolog sequences are not mutually independent (maximum pairwise identity is 40%), but the p-value computation assumes independence.
