Sentence examples for maximum pairwise r from inspiring English sources

The linkage disequilibrium (LD) between these three SNPs is weak (maximum pairwise r = 0.047; Table  1), which further suggests that they represent independent risk factors for endometrial cancer.

Genomic coverage and power have been previously described for a number of arrays, using either HapMap (Li et al. 2008) or 1000 Genomes Project pilot data (Lindquist et al. 2013) as reference sets and using maximum pairwise r.

This relationship has been used to estimate the genome-wide power to detect an association with various SNP arrays, using the maximum pairwise r for each variant in a genome-wide reference set such as the HapMap (Li et al. 2008) or 1000 Genomes Projects (Lindquist et al. 2013).

An implicit assumption is that all SNPs are independent, and, for this reason, in a preprocessing step, we filtered SNPs by LD, ensuring maximum pairwise LD r = 0.8.

The first measure is the maximum pairwise squared correlation (r ) between discrete allelic dosages at the untyped variant and any of the genotyped variants.

Denote by x k = (x1 k,..., x Mk ) the normalized data for subject k and define the distance between two clusters C r and C s by d rs = max{|| x k - x l || : x k ∈ C r and x l ∈ C s }, that is, d rs is the maximum pairwise distance between members of the two clusters.

To provide an insight about the overall levels of LD in the different breeds, genome-wide pairwise r values of SNPs separated by a maximum distance of 100 kilobases (kb) (average SNP distance was 7.9 kb), were calculated and graphed using R [ 24] and PLINK [ 19, 20] software.

Additionally, CheS-Mapper provides the standard deviation and maximum pairwise SALI values.

Genetic distances between species are reported as minimum pairwise distances, while intraspecific variation is reported as maximum pairwise distances.

Genetic divergence among ITS types averaged 4% (maximum pairwise divergence was 13%).

The maximum pairwise nucleotide divergence between all 101 serotypes in this region was 45% (Figure 2).