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For the SVMPIIIs, the maximum pairwise nt divergence was 20.4% with a maximum amino-acid divergence of 42.3%.
The maximum pairwise nt divergence for the SVMPIIs was 10.0%, corresponding to a maximum amino-acid divergence of 18.1%.
The diversity of SVSPs within the C. adamanteus genome is high; maximum pairwise nt divergence is 20.6% and amino-acid divergence is 47.4%.
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The first, Clone H, is a set of 84 heavy-chain genes of common length 376 nucleotides (nt), with an average (± standard deviation) pairwise difference of 30.4 ± 9.4 nt and a maximum pairwise distance of 61 nt. Figure 2 shows the clonal phylogram for this set of sequences.
The second, Clone K, is a set of 12 kappa-chain sequences of length 299, with an average of 12.2 ± 4.8 nt differences and a maximum pairwise distance of 21 nt.
Additionally, CheS-Mapper provides the standard deviation and maximum pairwise SALI values.
These relationships are described in Table 1 in terms of pairwise nt and aa distances.
Genetic distances between species are reported as minimum pairwise distances, while intraspecific variation is reported as maximum pairwise distances.
Genetic divergence among ITS types averaged 4% (maximum pairwise divergence was 13%).
The maximum pairwise nucleotide divergence between all 101 serotypes in this region was 45% (Figure 2).
3D dist.: maximum pairwise 3D distance between alpha carbons.
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