Sentence examples for maximum pairwise k-mer from inspiring English sources

We also report the validation results by computing the maximum pairwise k-mer distance and the global alignment distances for each OTU, produced by LSH-Div.

The maximum pairwise Ks value of the most distant ZNF280BY locus (AC172950) to the remaining active loci in bovine is 0.0443.

As currently implemented, detection of local insertions is limited to less than maximum k-mer size.

IDBA-tran assemblies were performed using an initial kmer size of 20, an iteration size of 5, and a maximum k-mer size of 60.

This technique reduces the total number of sequences and therefore reduces the time taken by k-mer pairwise distance matrix calculation.

Studies based on simulated data suggest that trees based on pairwise distances computed from k-mer statistics can, under certain circumstances at least, be more accurate than those based on MSA [ 34].

The maximum length of k-mers is thus 32 nucleotides and the maximum possible total count of any given k-mer and its reverse complement is 2 - 1.

The concept of directly using k-mer frequency for pairwise sequence data comparison has been well explored by Nordstrom et. al. [ 106] to identify mutation between mutant and wild-type individuals.

Then we compare the resulted maximum HES with HES of just one k-mer, namely L[ i]: if HES(L[ i]) is greater, then the final choice for LN[ i] is L[ i], otherwise LN[ i] = LN[ j]∪ L[ i].

Let t be the total weight of the edges of the graph G, which is polynomial with m and the maximum number of k-mers in a BAC.

Conversely, for genes having different cluster labels in datasets k and, the maximum pairwise fusion probability was 0.05 and the mean was 0.01.