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We apply the community analysis described in Section 3.2 and obtain a network partition in S = 5, 838 and S = 4, 665 modules, for the 'grassroots' and 'elections' data sets respectively, with optimized Q values and maximum module size S max given in Table 2 (note that we report only on results for the Walktrap algorithm).
The maximum module size at this step was 160 (module size (3 > size ≤ 160).
At this step size, the maximum module size was 54 (module size (3 > size ≤ 54).
To discover functional modules in the III network, we applied MODES network clustering method [ 16] on low-confidence III network to discover isoform modules with the given parameters (minimum module size 3, maximum module size 30, and density cutoff 0.7).
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Modules were identified with dynamic tree cut with minimum module size = 20, using the hybrid method.
We develop a scoring method to rank significant modules, and configure the algorithm to improve the search for informative modules by including a series of stopping criteria in the merge process, using modularity, module size and maximum module score to guide clustering.
The merge process is complete when one of the following conditions is met: 1) maximum modularity, 2) maximum size, or 3) maximum module score (Section Weights and significance scoring).
Considering that there is an optimum module size corresponding to the maximum power output in a TEG system, the effects of heat transfer characteristics between the fluid channel and the thermoelectric modules on the optimal thermoelectric performance are investigated by using an engineering equation solver (EES) program.
The merge process reached a maximum size at step 2069, and the community search resulted in 8116 singletons, 206 pairs, 77 triplets and 174 modules (module size (3 > size ≤ 200).
module size, suitable for operation in the filtration test stand.
Basic Statistics (# genes, # modules, average module size (AMS), Density (DY)).
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