The method of extraction was maximum likelihood with oblique rotation.
The method in extraction was Maximum Likelihood with Direct Oblimin rotation.
The five equations are estimated jointly using maximum likelihood with heteroskedasticity robust standard errors (see Roodman 2007, 2009).
The parameter estimation methods we are applying are least squares estimation, maximum likelihood estimation, and maximum likelihood with jackknife estimation.
The classification experiments were carried out with three different classifiers: Support Vector Machine, Gaussian Maximum Likelihood with Leave-One-Out-Covariance estimator, and Linear Discriminant Analysis.
Each of the gene trees were constructed by maximum likelihood with PHYML 3.0 [50].
Then the model was refitted, using the method of maximum likelihood with the autoregressive error terms of the required order.
Substitution rates dAA were estimated via maximum likelihood with the PAML package (Jones [10] substitution matrix) [11].
The PAML software package [39] (freely available at http://abacus.gene.ucl.ac.uk/software/paml.html) uses a phylogenetic analysis by maximum likelihood with several possible models to analyze evolutionary rates.
We built path analyses using AMOS 16.0 [24], fitting general structural equation models using the method of maximum likelihood with multinormal errors.
Phylogenetic relationships were constructed using the Neighbor-Joining method, and the pairwise distances were calculated by the maximum likelihood with the DNADIST program.
