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Maximum likelihood trees were constructed with RaXML45.
Lineage clonality was inferred by investigating congruence of maximum likelihood trees [64].
Alignments (by muscle) of extracted proteins were used to calculate maximum likelihood trees.
Maximum likelihood trees were created using TREE-PUZZLE [34] and RaxML [35].
Maximum likelihood trees using hundreds of sequences can be used for gene identification.
Maximum likelihood trees (bootstrap number = 100) were generated by using the PhyML 3.0 software [79].
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Maximum-likelihood trees were built using RaxML42 with the GTR + Γ model and slow bootstrapping.
One of the 245 analysed maximum-likelihood trees was randomly chosen and visualized.
Price, M. N., Dehal, P. S. & Arkin, A. P. FastTree 2 approximately maximum-likelihood trees for large alignments.
The ten maximum-likelihood trees for subsequent analyses were chosen evenly from the resulting clusters of trees.
Price, M. N., Dehal, P. S. & Arkin, A. P. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments.
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maximum likelihood methods
maximum posteriori trees
maximum likelihood searches
maximum likelihood analyses
maximum likelihood phylogenies
maximum credibility trees
maximum likelihood parameters
maximum likelihood procedures
maximum likelihood scores
maximum likelihood reconstructions
maximum likelihood topologies
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