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The maximum likelihood tree is available in Fig. S1.
The maximum likelihood tree is available in Appendix S1.
The Maximum Likelihood tree, rooted with the orthologous rpoD sequences from X. campestris pv.
A maximum likelihood tree was constructed, revealing high bootstrap support for 90% of species clusters.
A maximum likelihood tree was built from the curated alignments using PHYML [77].
The maximum likelihood tree (Fig. S2) groups the central Hox genes with the Cdx genes.
The phylogenetic distances were derived from the original maximum likelihood tree.
Maximum Likelihood tree of the Total1080 dataset.
Maximum likelihood tree with 1000 bootstrap resamplings.
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Ensembl's orthology and paralogy relationships are based on a maximum likelihood tree-building algorithm, TreeBeST [ 7].
However, on the maximum-likelihood tree, NVHD065 groups with the Xlox family.
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