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The results of Johansen maximum likelihood tests are presented in Table 5.
Although Wright and Charlesworth (2004) extended HKA tests by incorporating maximum likelihood tests, the HKA has been rarely used in genome-wide analysis for its constant effective population size assumption (Nei and Kumar, 2000).
Nevertheless, MDL1 was subjected to the maximum likelihood tests for positive selection with PAML and HyPhy.
In the FBN8 gene the maximum likelihood tests of PAML indicated several sites as exhibiting values of dN/dS greater than 1.
Regarding MDL1, the result of the McDonald-Kreitman test is corroborated by the maximum likelihood tests implemented in the PAML and HyPhy analysis.
Aimed at reducing the computational effort, a reduced LRIM1 data set, containing 70 sequences, was used for phylogenetic analyses and maximum likelihood tests of positive selection.
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Variance components were estimated and restricted maximum likelihood test statistics were calculated at the midpoint of each marker interval.
The present study also employs a cointegration technique using maximum likelihood test statistics.
In a non-linear model that presents regimes for certain variables, the maximum likelihood test does not have a standard asymptotical distribution.
Based on the maximum likelihood test, the hypothesis of the equality of frontier function in all of the subsectors, except the basic metal industry (BMI) subsector, was rejected, and this indicates that these functions can separately be estimated.
Variables were also checked for co-linearity and interactions and model fit assessed with the maximum likelihood test.
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