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Some internal node relationships varied by species tree reconstruction method, and were associated with either Bayesian or maximum likelihood statistical approaches or between mitochondrial, nuclear, and combined datasets.
Using a maximum likelihood statistical method, chromosomes affected by MSG or SR and likely to represent changes that are selected for during tumor progression were found to be different and mostly mutually exclusive.
Phylogenetic trees were constructed using the maximum likelihood statistical method based on the Tamura-Nei model.
The best method invokes a complex maximum likelihood statistical imputation method.
Stacks incorporates a maximum likelihood statistical model to identify sequence polymorphisms and distinguish them from sequencing errors.
Barker et al. applied maximum likelihood statistical modeling for predicting functional protein linkages based on Phylogenetic profiling [ 13].
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With the model for X with Zs and Y, we can weigh the two possibilities of the missing value of X, X = 1 and X = 0, in the likelihood function for maximum-likelihood statistical inference on parameters.
This program finds optimal progeny male parent pairs and uses maximum likelihood for statistical evaluation of the matches (Marshall et al., 1998).
Model parameters were estimated by using the maximum likelihood method; their statistical significance was assessed by using the Wald statistic (8 ).
The model described in eq. 1 8 can be fitted using least squares, maximum likelihood or Bayesian statistical methods.
The Mus musculus CLDN4 and CLDN13 clade is only strongly supported by maximum likelihood, however all statistical methods applied consistently reproduced this grouping, albeit with a reduced level of support (data not shown).
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