Sentence examples for maximum likelihood searches from inspiring English sources

We performed maximum likelihood searches of the combined fHANT-AC dataset using mixed protein models in RaxML-VI-HPC (see above) for the optimal topology and also for the best topology in which ascomycete sequences were constrained to be monophyletic.

We also performed (D) maximum likelihood searches of a combined rDNA dataset and an RPB2 dataset in RaxML-VI-HPC ver. 2.2.3 [53] (mixed GTR and protein models) for the optimal topologies and also for the best topology in which T. reesei sequences were constrained to form a clade with U. maydis.

Fifty maximum likelihood searches were performed.

The phylogenetic relationships among taxa were inferred using Bayesian inference (BI) and maximum likelihood searches (ML).

A search combining 200 separate maximum likelihood searches to find the optimal tree was conducted.

Statistical distributions were based on 20 maximum likelihood searches of 100 data simulations.

It is shown that the sequential method also outperforms the maximum likelihood search-based parameter estimation in cases where the initial positions of the targets is not precisely known.

The alignment was submitted to the RAxML [50] web server hosted by the Cyberinfrastructure for Phylogenetic Research, CIPRES PORTAL v1.14 (http://www.phylo.org/) for maximum likelihood tree analysis with specified parameters: Substitution matrix  =  JTT; Maximum likelihood search; Random seed for bootstrapping  = 12345; Number of bootstrapping runs  = 100).

Tree searches were conducted for 1000 bootstraps with a final maximum likelihood search.

To find best tree using maximum likelihood search, bootstrapping halted automatically and printed branch lengths.

Trees were obtained using empirical base frequencies and a maximum likelihood search.