Sentence examples for maximum likelihood search from inspiring English sources

The alignment was submitted to the RAxML [50] web server hosted by the Cyberinfrastructure for Phylogenetic Research, CIPRES PORTAL v1.14 (http://www.phylo.org/) for maximum likelihood tree analysis with specified parameters: Substitution matrix  =  JTT; Maximum likelihood search; Random seed for bootstrapping  = 12345; Number of bootstrapping runs  = 100).

To find best tree using maximum likelihood search, bootstrapping halted automatically and printed branch lengths.

Tree searches were conducted for 1000 bootstraps with a final maximum likelihood search.

Trees were obtained using empirical base frequencies and a maximum likelihood search.

The program RAxML-VI-HPC [ 84] was used for the maximum likelihood search for the most likely tree.

Supports for nodes were assessed using 100 rapid bootstrap inferences and thereafter by a thorough maximum likelihood search.

It is shown that the sequential method also outperforms the maximum likelihood search-based parameter estimation in cases where the initial positions of the targets is not precisely known.

We performed maximum likelihood searches of the combined fHANT-AC dataset using mixed protein models in RaxML-VI-HPC (see above) for the optimal topology and also for the best topology in which ascomycete sequences were constrained to be monophyletic.

We also performed (D) maximum likelihood searches of a combined rDNA dataset and an RPB2 dataset in RaxML-VI-HPC ver. 2.2.3 [53] (mixed GTR and protein models) for the optimal topologies and also for the best topology in which T. reesei sequences were constrained to form a clade with U. maydis.

Fifty maximum likelihood searches were performed.

A search combining 200 separate maximum likelihood searches to find the optimal tree was conducted.