Sentence examples similar to maximum likelihood programme from inspiring English sources

Using CERVUS 3.0, a maximum-likelihood programme that calculates logarithm-of-odds scores for candidate parents from simulations based on given allele frequencies (Kalinowski et al. 2007), parentage was assigned to these simulated offspring to estimate a correctness rate, or the proportion of offspring correctly assigned.

The phylograms were constructed from aligned sequences using the protein maximum likelihood, proml, programme in PHYLIP [Phylogeny Inference Package Version 3.69; [ 52] and drawn with Dendroscope [ 53].

Phylogenetic analysis was performed on aligned sequences using the protein maximum likelihood, proml, programme and tree topology edited using Retree from the PHYLIP (Phylogeny Inference Package) Version 3.69 http://evolution.genetics.washington.edu/phylip.html.edu/phylip.html

Maximum-Likelihood (ML) trees were generated using the Randomized Axelerated Maximum Likelihood (RAxML) program [ 61].

All three programmes (maximum likelihood, minimum evolution and neighbour-joining) show that the coelacanth Dnmt3a is clustered with tetrapods' Dnmt3a, but not with other fishes' Dnmt3a.

The data set was analysed using the DNAdist (maximum likelihood parameter) and Neighbour Joining programmes within the PHYLIP package [ 29].

Phylogenetic analyses of the dataset using either the maximum likelihood (DNAML) or parsimony (DNAPARS) programmes within the PHYLIP package did not improve the resolution of isolates or demonstrate significant differences in topography or bootstrap support (data not shown) which lends support to the co-existence of closely related urban and sylvatic rabies cycles in Southern Africa.

The core genome alignment and maximum likelihood phylogeny was determined using the parsnp programme implemented in Harvest suite of tools [ 49], resulting in a core genome of 733,991 bp.

The phylogenetic trees were constructed with the MEGA programme version 5 using the maximum likelihood method and WAG model [28].

A maximum likelihood phylogeny was estimated using the RA×ML software programme.

The CODEML programme of Phylogenetic Analysis by Maximum Likelihood (PAML v4.2) (Yang 2007) tests whether a branch has an accelerated rate of amino acid replacements against the background rate of the other branches in a phylogeny.