BMI Body mass index CI Confidence interval CCHS Canadian Community Health Survey FIML Full information maximum likelihood HUI3 Health Utilities Index (Mark 3) Kcal Kilocalories LR Likelihood ratio OR Odds ratio SD Standard deviation The author(s) declare that they have no competing interests.
This function renders for each potentially admixed individual a maximum likelihood hybrid index estimate with its 95% confidence interval [ 38].
The est.h function of Introgress was applied to calculate a maximum likelihood hybrid index estimate h for each potentially admixed individual (Gompert and Buerkle 2010).
Maximum likelihood method provides indices of overall goodness of fit including overall Chi Square, Comparative Fit Index (CFI) and Root Mean Square Error of Approximation (RMSEA) [ 32].
The previous studies suggest that CAI index correlates better with expression level of a gene than other codon usage indices, such as the effective number of codons, codon bias index, the frequency of optimal codons, intrinsic codon bias index, maximum likelihood codon bias, synonymous codon bias orderliness, and measure independent of length and composition (MILC), etc.
With M-phase (M≥2) case-control data supplemented by information on a response and certain covariates, we propose a pseudo maximum likelihood estimation for the index coefficients.
The closeness of the variance-covariance matrix implied by the hypothetical model to the empirical variance-covariance matrix is evaluated through goodness-of-fit indices, including maximum likelihood chi-square values/degrees of freedom ratio, the comparative fit index (CFI), the root mean square errors of approximation (RMSEA), and the non-normed fit index (NNFI).
Zmax: maximal depth; N: number of analysed individuals; MLG: number of observed multilocus genotypes; clonal richness: MLG/N; clonal diversity: the complement of the maximum likelihood estimator of Simpson's index, (1-D); polym.
Clonal richness was expressed as the number of MLGs detected in the sample divided by the total number of studied individuals in each population (MLG/N), the clonal diversity as a complement of the maximum likelihood estimator of Simpson's index (1-D), calculated in the program SPADE [ 44].
Model fitness was assessed based on the maximum likelihood method by using the following fit indices: goodness-of-fit index (GFI), adjusted goodness-of-fit index (AGFI), comparative fit index (CFI), and root mean square error of approximation (RMSEA).
