Sentence examples for maximum intron size from inspiring English sources

-I, -max-intron Maximum intron size for de novo junction search (INT) [ default: 500000 ]. -i, -max-intron Maximum intron size for de novo junction search (INT) [ default: 20 ]. -e,–-min-exon Minimum micro-exon size to be searched (INT) [ default: 9 ].

SpliceMap was run with the same 6 kbp maximum intron size (the minimum intron size is not configurable).

Because HMMSplicer must match the second piece of the read downstream of the initial exon edge identified, the HMMSplicer algorithm is sensitive to maximum intron size.

SpliceMap divides reads in half, aligns each read half to the genome, then locates the remaining part of the read downstream within the maximum intron size.

SpliceMap was run on the A. thaliana dataset by the SpliceMap first author using a 6 kbp maximum intron size (personal communication).

The A. thaliana dataset was run with default parameters except for a minimum intron size of 5 and a maximum intron size of 6000.

Minimum and maximum intron sizes were set to 30 and 817, respectively.

For compact genomes with smaller maximum intron sizes, such as the P. falciparum and A. thaliana datasets below, a shorter anchor size of 6 nt can be matched uniquely (data not shown).

The minimum and maximum intron sizes were set to 20 bp and 409 600 bp for all approaches.

The minimum, mode, and maximum intron sizes for each fish are given in table 1. Above the 5,000-bp 5,000-bpn figure 1 a, the number of instancutoff each individual size class is very low, causing a great scatter in values, although the trend does not difigure

Mapping was optimized for non-mammalian data sets as per program instructions by changing the maximum allowed intron size to 5Kb.