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b: Maximum identity, query coverage, and taxonomic information about the species of fungi from the patches invaded and un-invaded by Conyza sumatrensis.
b: Maximum identity, query coverage, and taxonomic information about the species of bacteria from the patches invaded and un-invaded by Conyza sumatrensis.
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Most significant alignment with lowest E-value from each of the organisms were considered with the threshold of >50% in terms of either maximum identity or query coverage.
Based on maximum identity score and query coverage, the best highly identical 10 sequences were selected and aligned using multiple alignment software program, ClustalW (MEGA tool).
Sequence-based identities with the best hit were defined as the sequences with the highest maximum identity to the query sequence.
ORFs <120 bp were discarded when <span class="lh">query coverage and maximum identity criteria were not in the required range.
The nearest protein homologs were determined, as in Rost (1999) and Raghava and Barton (2006), taking into account query coverage (in percent), maximum identity (in percent), alignment scores (maximum and total score) and e value (Table S1B).
PknJ kinase domain shows considerable identity with other Mycobacterium STPKs (including maximum identity of 50% with PknF).
The maximum identity for each pseudogene against all possible expression cassettes was determined and the mean, standard deviation, mode, and range of maximum identities calculated.
It has a high sequence identity, query coverage, less E-value, and a high level of alignment quality with query sequences.
However, maximum identities varied considerably, ranging from 16.8 to 100%.
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