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Our resulting modified genomes have several times more unique restriction sites and reduce the maximum gap between adjacent sites by three to nine-fold.
The maximum gap between them is about 317 s.
This setup naturally leads to the problem of clustering, which in its simplest form reduces to the problem of identifying the maximum gap between the means, and I will also discuss algorithms for adaptive clustering.
We now calculate the maximum gap between the outer bound, given in (33), and the achievable rate-region, given by (30).
The implementation of PPHT imposes three parameters: (1) a threshold, indicating the minimum number of points in a bin, in the line parameter space, in order to consider that the line is represented by a sufficient number of points, (2) the minimum length of a line segment, and (3) the maximum gap between line segments lying on the same axis.
To ensure that locally low SNP density does not increase the length of an ROH, a required minimum density was set at 50 kb/SNP and the maximum gap between two consecutive SNPs in a tract was set at 100 kb.
Similar(41)
Post-operative fill parameters such as mean stem-to-canal ratios and mean minimum and maximum gaps between the stems to the cortical bone in different sections and areas were compared.
As expected, self-consistency declined when using larger maximum gaps between contigs for scaffold construction but only to 98.3%% for a 5 kb maximum gap.
In all searches, the maximum overlap between a predicted locus and an annotated ORF was set at 65 and the maximum gap allowed between the 3' end of a region of conservation and the 5' end of a predicted Rho-independent terminator was 35 bp.
The minimum required density was one SNP per 500 kb and the maximum gap allowed between any two consecutive SNPs was 1000 kb.
A whole genome alignment was performed with Mugsy [ 35] on a total of 23 available A. baumannii genomes (Additional File 2, Table S2) using a maximum gap length between orthologous blocks of 100 base pairs.
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