Sentence examples for maximum edit distance from inspiring English sources

Final mapping analyses were conducted specifying the maximum edit distance n = 10− and the maximum edit distance in the seed k = 5 in BWA.

For standard BWA settings, the maximum edit distance allowed in a given alignment is controlled dynamically according to read length.

The maximum edit distance was two and the maximum number of alignments for each read was one.

The reads were aligned against the GRCh37 human reference genome by BWA (version 0.6.1) in a paired-end mode, allowing for a maximum edit distance of four.

We used mostly default BWA options for single-end mapping, with iterative search disabled and allowing a maximum edit distance of two.

The resulting reads were mapped to the baboon genome (Panu2.0) using the efficient short-read aligner bwa 0.5.9 (Li and Durbin, 2009), with a seed length of 25 bases, a maximum edit distance of two mismatches in the seed, a read trimming quality score threshold of 20, and the default maximum edit distance (4% after trimming).

The measurement shows the exponential increase in runtime with the maximum allowed edit distance.

Otherwise, the distance between the sequences was defined as minimum edit distance normalised to the length of the test sequence, upto a maximum of 1 in 5 (or a total of 10) mismatches or indels.

The similarity is checked using the minimum edit distance (MED) algorithm [30].

For overlapped detections, the best detection (i.e., the one with the minimum edit distance) remains.

The maximum deformation t (edit distance) is calculated as the ratio between the alignment score and the highest substitution score.