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Supporting this, robust phylogenies (Figure 1) were observed with maximum bootstrap support (97 100%) in the three main branches corresponding to the traditional chlamydial serogroups.
pennsylvanicum were found to group together, with maximum bootstrap support.
A phylogenetic tree, generated using RAxML (Fig. 3), revealed that Pl. halstedii is nested within the Phytophthora spp. with maximum bootstrap support, while Hy.
In this study, maximum bootstrap support for a sister-group relationship of U. maydis and Sp. reilianum was observed for the first time.
In the PsbO phylogeny (Fig. 1A), the L. chlorophorum sequence clustered within green algae and landplants, and was differentiated from red algal sequences with the maximum bootstrap support.
One is the clustering of Macroglossini and Harpyionycterinae as sister clades also obtained in MP tree and several of the suboptimal ML trees, with maximum bootstrap support of 73%.
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Support levels are shown for each node; from left-to-right: Maximum Parsimony bootstrap support values (>70), Maximum Likelihood bootstrap support values (>70), Bayesian posterior probabilities (>90), respectively.
Maximum parsimony analyses and maximum parsimony bootstrap support measures were performed with PAUP* v.4.0b10 for Unix [ 59] on the complete alignment with gap coding, as well as the reduced data matrix, with the data sets partitioned into the non-recombined 5' and 3' parts from the GARD recombination detection procedure.
The Maximum Likelihood tree was calculated using the -f d search function in RaxML v7.0.4 and Maximum Likelihood bootstrap support values were calculated using the -f i search function for one thousand replicates.
Phylogenetic analyses based on both chloroplast genes and inverted repeat regions provided maximum bootstrap (BS) support for a sister relationship between Macadamia and Platanus, and for a Proteales clade also containing Nelumbo (BS 100%).
Maximum likelihood bootstrap support (BS) values ≥90% were considered to constitute strong nodal support.
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