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Under the assumptions of independence and identical distribution, a maximum likelihood analysis is performed.
Figure 1 shows the partial tree obtained from maximum likelihood analysis.
Factor analysis (Maximum Likelihood analysis with Oblimin rotation) revealed Facebook connectedness to be distinct from offline social connectedness.
Fig. 1 Maximum likelihood analysis with 10,000 bootstrap replications based on the Kimura 2-parameter model.
Maximum likelihood analysis was done using PHYML v2.4.4 [27].
The second dataset was also analysed with a maximum likelihood analysis.
This model was then used in a RAxML (RAxML-VI-HPC, v2.2.1) [45] maximum likelihood analysis.
A maximum likelihood analysis was also performed with gaps treated as missing characters.
The PHYML 2.4.4 package [86] (http://atgc.lirmm.fr/phyml/) was used for maximum likelihood analysis.
Maximum likelihood analysis continually compares trees and chooses the one with the best score.
The maximum likelihood analysis resulted in six trees after 75166 rearrangements tried from a starting Neigbour Joining tree.
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