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Therefore, in order to maximize phylogenetic resolution, subsequent phylogenetic analyses were performed on a concatenated alignment of the two subunits.
In order to maximize phylogenetic resolution, we separately analyzed these two eukaryotic subtrees, along with their closest bacterial outgroups (supplementary fig. S5 a and b, Supplementary Material online) and present the composite tree in figure 5.
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Our use of evolutionarily informative SNPs derived from WGSs is imperative for maximizing phylogenetic resolution and reduces the likelihood that individual LGT events will corrupt the overall phylogeny, as can be expected with limited genomic sampling.
Other lineage-specific indels were included to maximize phylogenetic signal for intra-clade phylogenies, even at the expense of resolution at deeper nodes.
Therefore, sequences of both genes were concatenated to maximize phylogenetic signals (1302 characters).
Several studies pointed out the relevance of integrating secondary structure information in sequence analysis and phylogenetics, both in terms of phylogenetic resolution and of marker suitability for phylogenetic reconstruction at higher taxonomic-rank.
Utility of nuclear DNA intron markers at lower taxonomic levels: phylogenetic resolution among nine Tragelaphus spp., Molecular Phylogenetics and Evolution 35(3) 624–636 | doi 10.1016/j.ympev.2005.01.018 Colleen T Downs, Morgan Pfeiffer and Lorinda A Hart (2014).
Pamjav H, Feher T, Nemeth E, Padar Z: Brief communication: new Y-chromosome binary markers improve phylogenetic resolution within haplogroup R1a1.
To allow for the highest possible phylogenetic resolution, data are provided as single nucleotide variants.
Phylogenetic resolution within the Elephantidae using fossil DNA sequence from the American mastodon (Mammut americanum) as an outgroup.
However, limited phylogenetic resolution, particularly of subclades within haplogroup K, has obscured the relationships of lineages that are common across Eurasia.
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