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For alignments longer than 250 residues, HVAL < 0 implies that the <span class="lh">maximal pairwise sequence identity was 20% (Rost, 1999).
The second set (dubbed "hval0") contained 3,767 chains; it resulted from filtering at HVAL>0 [ 2, 3, 13] (corresponding to ~20% maximal pairwise sequence identity for alignments over 250 residues).
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Since the alignments which were taken to train the SVM are no longer than 400 nt, have a minimal pairwise sequence identity of 60% and contain maximal six sequences, test alignments were created which meet the same criteria.
Each major ampullate silk gene with upstream sequence was sequentially input as the reference to obtain maximal pairwise alignments.
Pairwise sequence alignment is ubiquitous in modern bioinformatics.
Linear representations are compared using global pairwise sequence alignment [3].
SN is the pairwise sequence number while is the local broadcast sequence number.
Table 2 Neighbor table. 2 Bytes 8 Bytes 2 Bytes 8 Bytes 2 Bytes Node ID Pairwise key Pairwise sequence number Local cluster key Local broadcast sequence number.
This chapter discusses the recent advances in GPU solutions for two main sequence comparison problems, pairwise sequence comparison and sequence-profile comparison.
Positions containing missing data were eliminated only in pairwise sequence comparisons (pairwise deletion option).
Pairwise sequence comparisons of ERbeta subtypes were calculated.
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