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The maximal memory usage of BS-SNPer was 8 GB, whereas MethylExtract and Bis-SNP used 10 GB for all cases, respectively.
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For memory usage comparison, we quantified variation of maximum memory usage by cross-comparisons among multiple aligners against maximum memory usage percentage of the server.
Memory corresponds to the maximum memory usage during the program execution in megabytes.
For pipelines with multiple steps, we recorded the maximum memory usage of all steps.
The maximum memory usage during the assembly reached 800 GB during the super-reads step.
This active matching should be implemented while retaining maximal speed of Peptrix and the minimal memory usage of the work station.
Memory usage measures the maximum memory consumption of an application during its runtime.
PKDGRAV3 has been developed to minimize memory usage per particle (see below) and allow the maximal use of the available memory for particles.
An increase of the maximal interaction length to 140 nt raises I NTARNA's runtime to 29 h with unchanged memory usage, whereas RNA UP now requires 207 h and 4.3 GB RAM.
The memory usage presented in Table 10 is the maximum memory.
Figure 3 Memory usage.
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