Sentence examples for matrix were inferred from inspiring English sources

Q matrix and K matrix were inferred from the STRUCTURE and TASSEL 4.0 standalone programs, respectively, using allelic data from 756 evenly distributed SNP markers (Additional file 2).

First, the correlation matrix is inferred from the data.

The presence of GAGs in stone matrix was inferred by Boyce and Garvey as long ago as 1956 [ 62].

The Y matrix is inferred from Equation (2) by variational Bayesian learning (Dueck et al., 2005; Jordan et al., 1999) with constraints that (3) where · denotes an element-by-element product of C and Y, which means that the element Y il of Y can be non-zero only when C il =1.

In general, DV were lower if distance matrices were inferred and gaps were treated as a 5thcharacter state (Fig. 4).

Finally, maximum likelihood distance matrices were inferred using the model specifications from jModelTest; this was done with PUZZLE [ 22].

Distance matrices were inferred using the Jones, Taylor, Thornton (JTT) substitution model with PROTDIST in PHYLIP 3.6a3 [ 77, 78].

The best DNA substitution model and distance matrices were inferred with MEGA v5 (Tamura et al. 2011).

Using the Multiple Em for Motif Elicitation (MEME) Suite of motif-based sequence analysis tools, 26 two vitamin D-responsive elements (VDRE) positional weighted matrices (PWMs) were inferred from VDR-ChIP sequencing data recently published by Heikkinen et al. 23 and Ramagopalan et al. 24 (see Fig. S1).

Note: The solutions of problem (3) compared with the cost measures (PRS and Gillis matrix) from which the constraints were inferred.

Tree topology for the 16 S rRNA nucleotide sequences were inferred by the distance matrix using Neighbour Joining method [ 52].