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After the obtained p-values were transformed in minus log scale with base 10, the symmetric p-value matrix was visualized as a heat map (Figure 9).
Mineral deposition into the formed collagenous extracellular matrix was visualized by staining the cells at day 12 with 3% silver nitrate (von Kossa staining).
The entire extracellular matrix was visualized with ConA-Alexa 350 (blue, for GFP-expressing strain, figure 3) or ConA-Alexa 488 (green, for strain SC5314, figure 4) and the β-glucan component was visualized using the monoclonal antibody BFDiv, followed by a Cy-3-conjugated secondary antibody (red).
The clustered matrix was visualized using Java TreeView.
The matrix was visualized using Treeview version 1.1.1 http://rana.lbl.gov/EisenSoftware.htm.htm
34 The matrix was visualized using a Linux version of matrix2png.
In this situation, only one matrix is visualized at any given moment.
To illustrate the idea of the subband approach, the spectrogram of an estimated source signal is shown in Figure 2a as an example, and its corresponding correlation matrix is visualized in Figure 2b.
The recognition motif of the T4 clone (the PSSM matrix) is visualized in Fig. 1A as a Logo plot [11].
The gene expression matrix is visualized by a heatmap, where the gene expression levels are represented by colors.
The cells with their pericellular matrix were visualized using the particle exclusion assay, as previously described [ 24, 27].
