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Each distance matrix was calculated using the union of DEGs for each cell type.
The distance matrix was calculated by counting the number of differences.
Then, a sub-pixel transitive probability matrix was calculated.
In the next stage, the fuzzy decision matrix was calculated using Eqs.
The density of the solid matrix was calculated from the volume and mass of a crushed rock sample.
In their study, the approximate Hessian matrix was calculated using the inverse of the covariance matrix of the prior model.
An allele-sharing matrix was calculated using the kinship.emma function.
A PHYLIP generated DNA distance matrix was calculated using the Jukes-Cantor method and used for LIBSHUFF.
The DNA distance matrix was calculated from the data set according to the JTT and using the Protdist program.
To perform AMOVA, a distance matrix was calculated using Tamura & Nei distances [79] and significance levels were determined with 1000 permutations.
As indicated above the global gene to gene (i.e. pair-wise) coexpression matrix was calculated using two different and independent methods: MAS5-Spearman and RMA-Pearson.
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