Sentence examples for matrix score of from inspiring English sources

The percentage sequence similarity (PSS) between two sequences was calculated by:

First, we employed a motif finder, part of Mod Tools [75], to locate potential HSEs by searching for the 8-nucleotide sequence TTCNNGAA, allowing for a maximum of 4 mutations and screening for 8 bp sequences with a matrix score of at least 70.

The cut-off was set to a core score of 1.0 and a matrix score of 0.9 [23].

We only used those TFBSs that are mapped with a core- and matrix score of greater than or equal to 0.9.

These six member proteins contain a transmembrane domain, centered around 908 920 aa positions with a matrix score of more than 1000, as detected by TMpred analysis.

The deduced proteins contain transmembrane domains in their N-terminus region centered around 21 57 aa residues with a matrix score of more than 1000 as determined by TMpred analysis, indicating that these proteins are membrane bound.

In detecting the TFBS in promoter regions, cutoff values of core and matrix scores of the MATCH program are set to 1.0 and 0.7, respectively.

* For each matrix, scores of each gene were summarized based on its evidence in each dataset (see details in Table 1).

When the sum-min and the sum-product operator is used with the same matrix (the identity matrix), scores of the former naturally tend to be higher than scores of the later.

For each bootstrap we analyzed DEGs, pathways PEA-DEGs, and a matrix score for pairs of pathways.

Of these genes, six were identified as having highly significant matrix scores for the presence of an HRE (p < 0.001) (Fig. 2).