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For this, we used the contrast matrix referred from the LIMMA manual (https://www.bioconductor.org/packages/devel/bioc/vignettes/limma/inst/doc/ usersguide.pdf) as follows: Contrast.matrix <− makeContrasts (SubmergenceIR64 = IR64S-IR64C, SubmergenceIR64SubmergenceIR64Sub1IR64Sub1C, Genotype = (IR64Sub1S + IR64Sub1C) - (IR64Sub1CR64C) levels = desiGenotype
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The multivariate regression tree is used to obtain a Y × Y matrix, henceforth referred to as the proximity matrix.
Such a matrix is referred to as a Euclidean distance matrix.
In the context of Markov models, such a matrix is referred to as a probability transfer matrix.
Buffering is critically important because, for small entities such as bacteria and mitochondria, almost all pumped protons come from electron donor molecules or other cytoplasmic or mitochondrial matrix sources (referred to here as the internal buffer), not from free protons.
The macrostate-transition matrix is referred to as TM, with each entry TMi,j,k representing the transition probability from macrostate i to macrostate j using action k.
The physical region that extends from the unmodified bulk phases of both the substrate and matrix is referred to as the interphase.
Position specific scoring matrix (PSSM) refers to a matrix of score values generated from PSI-BLAST, which can represent the multiple sequence alignment of proteins.
For the convenience of comparison, Table 1 lists some parameters for three methods, respectively, where the column "Inverse filter" denotes the filter resulted from matrix inversion (referring to (9), (18), and (34)), the column "Matrix size" denotes the size of the matrix being inverted.
The 2×2 matrix C refers to the constraints.
In Neuromancer, Gibson first used the term "matrix" to refer to the visualised Internet, two years after the nascent Internet was formed in the early 1980s from the computer networks of the 1970s.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com