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This contraction, along with the synthesis of extracellular matrix, positions the myofibroblast as a critical effector cell in the wound-repair response [ 15].
In contrast to the explicitly model-based approaches, parsimony analysis of the molecular matrix positions Lipotes as the sister-group to the remaining delphinidans, and also resolves a clade composed of Platanista and Ziphiidae.
The neighbor-joining algorithm [ 66] as implemented by PFAAT [ 67] (see also [ 68]) was used to generate unrooted phylogenetic trees from these alignments using the BLOSUM 50 similarity matrix; positions with greater than 50% gaps were excluded.
The neighbor-joining algorithm as implemented by PFAAT was used to generate unrooted phylogenetic trees from these alignments using the BLOSUM 50 similarity matrix; positions with greater than 40% gaps were excluded.
This discrepancy arises because the matrix positions must be stored with the counts in the sparse representation (as row number, column number, value; see Additional file 5) but are implied in tab-separated text.
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A special combination of transmitting and isolating elements corresponds to each character matrix positioned ready to be photographed.
During this process, the pore and rock matrix position information was recorded.
Recordings were performed by using a grid of 16 electrodes, arranged in a 4x4 matrix positioned on the women's abdomen [20].
For the sites analyzed, it had an in built transition matrix, position weight matrix and conservation index.
A log-odds matrix was constructed from the position weight matrix by using the base 2 logarithm of the ratio of frequencies at each matrix position against a background frequency of 0.25 for each nucleotide.
For each motif, MEME outputs E-value, number of sites found, motif's logo, motif's blocks format, motif's block diagrams, position-specific scoring matrix, position-specific probability matrix, and so on [ 4].
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