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For the CGs, the linkage disequilibrium matrix plots of r2 (squared correlation coefficient) values against the pair-wise physical distance between polymorphic sites were obtained with software TASSEL [ 71].
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Fig. 1 Matrix plot of variables chemically associated with galacto-rhamnogalacturonan, e.g. galactose, galacturonic acid, rhamnose and CH100.
Additional file 7: Figure S3 shows example matrix plot of individual replicate amplification for 1 pg.
Matrix plot of normalized log-intensities visualized the degree of differentiation between muscular tissue transcriptomes of JIS and AIS group.
Matrix plot of normalized log-intensities was used to visualize the degree of differentiation between muscular tissue transcriptomes of group A-JIS and group B-AIS harvested from curve concavity and convexity.
A matrix plot of normalized log-intensities was used to visualize the degree of difference in TGF- β responsive genes between muscular tissue transcriptomes harvested from curve concavity and convexity in both groups.
Matrix plots were then constructed of the percentage changes in power from a baseline period of 2 0.1 s before the trigger and values of event-related desynchronization (ERD: power decrease) or synchronization (ERS: power increase), thresholded according to the confidence limits of this baseline period.
Matrix plot analysis of the expression data highlighted a greater number of up- and downregulated genes in the paravertebral muscles of group A (AM1 versus AM2) compared to group B, where these differences were less pronounced.
Dot matrix plots comparing the genomes of 95/1000, 56-150T and WA1 were generated using Freckle, an in-house development of the Dotter tool [22].
Matrix plot analysis of the transcriptomes visualized some differences in gene expression between the two groups of patients with different idiopathic scoliosis onset.
In order to assess the differences between the muscular tissue transcriptomes harvested from curve concavity and convexity in group A-JIS and group B-AIS matrix plot analysis of the mRNA expression data was performed,.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com