Sentence examples for matrix option of from inspiring English sources

The distance matrix option of PAUP *4.0b 10 [ 61] was used to calculate inter- and intra-species genetic distances as inferred from the nucleotide substitution model selected by MODELTEST 3.7.

Similarity matrices were calculated using the similarity matrix option in the neighbour joining field of the arb software package.

Protein distance for each pair of orthologs was calculated using Protdist in Phylip 3.69 (33) with the Dayhoff PAM matrix option.

Besides an inert matrix, the option of rock-like fuel with thorium dioxide was studied.

ML and BI were based on the WAG substitution matrix with options of four gamma-distributed rate categories and estimate of invariable sites (plus empirical base frequencies in ML).

(The rate-2/3 code and the rate-3/4 code are constructed using base-matrix option A in [2].) The performance of TDMP decoding is evaluated for each code with the Storm-1 processor using its 8-bit mode for saturating, fixed-point arithmetic.

Each reconstruction matrix size also used the option of a Gaussian filter and point spread function correction.

Table 3 Example of a pay-off matrix in one of the option of the venture creation game   Player 2 Cooperates Defects Player 1 Cooperates 2500, 2500 0, 5000 Defects 5000, 0 0,0.

The alignments were constructed with ClustalW option of MEGA, with Gonnet matrix and default parameter values.

The 66 resulting sequences were aligned using the "linsi" option of MAFFT and the MOLLI60 substitution matrix.

Within GSEA [ 14], enrichment analysis was performed using the option of collapsing probe sets in the gene expression data matrix to gene symbols.