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We used a matrix of pairwise genetic distance (linearized FST) between sampling locations.
Each accepted criterion has a matrix of pairwise comparisons of alternatives composed.
Initial tree(s) for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using a JTT model, and then selecting the topology with superior log likelihood value.
We modified the original extended haplotype homozygosity statistic (EHH 69 to account for unequally related strains or population structure in the sample with a matrix of pairwise distances between all strains.
These distance methods data using a matrix of pairwise distances.
Using this information a matrix of pairwise distances was calculated both for E.coli and S.cerevisiae.
A matrix of pairwise genetic distances by the maximum-parsimony algorithm and the neighbor-joining method was used to generate phylogenetic trees.
From the multiple sequence alignment (MSA) of the active sequences, we computed a matrix of pairwise distances, based on sequence identity.
A matrix of pairwise correlations among significant transcripts was constructed in an attempt to elucidate the genetic networks underlying variation in individual retinue response.
A matrix of pairwise distances was calculated using the global bivalve phylogeny and used to determine the MPD and MNTD of extinct families in the Arctic and Antarctic.
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