Sentence examples for matrix of counts from inspiring English sources

On average, 75% of the sequences could be assigned unambiguously to Augustus v10.2 gene models to generate the matrix of counts per gene.

The numbers of read tags aligning to each region were summarized using a custom python script producing a matrix of counts (tags per region per sample).

The final matrix of counts matching the UPTAG and DNTAG of each of the 20 samples is provided as Table S3.

We first summarize the raw data contained in a fastq file into a matrix of counts (samples in the columns, hairpins in the rows) with options for allowing mismatches and small shifts in hairpin position.

Starting with a set of training sequences all containing, and aligned on, a common functional site, we generate the PWC matrix V, a two-dimensional matrix of counts that is indexed by k-mer and relative position, respectively.

The matrix of counts returned by the processHairpinReads function, which contains hairpins in the rows and samples in the columns, is stored as a DGEList object so that it is fully interoperable with the downstream analysis options available in edgeR.

Let y ¯ ∗ be the mean vector of y i ∗ over K permutations and the B × K matrix Y∗ the mean-corrected matrix of count vector y i ∗.

3C experiments result in matrices of counts that represent the frequency of cross-linking between restriction fragments of DNA that are spatially near one another.

In edgeR, an appropriate object (d) was created by calling the DGEList function parameters as follows: counts = matrix of raw counts, group = list of order of columns in counts, lib.size = NULL, remove.zeros = TRUE.

20 A matrix of raw counts per gene was assembled using htseq-count 21 and Homo_sapiens.GRCh38.80.gtf gene models obtained from the Ensembl web site.

The sum s of the counts of codon pairs read by the same tRNA is computed by summing the elements of the matrix of observed counts X, according to the codon reading being evaluated.