Sentence examples for matrix of alignment from inspiring English sources
When testing single subjects' maps replicability, a pair-wise comparison between each map pairs was conducted, resulting with a matrix of alignment indexes.
Then the progressive multi-alignment is applied to the matrix of pairwise alignment scores.
In order to be able to study the effect of the inclusion of suboptimal alignments in terms of reconstruction accuracy we project the exponential of the matrix of pairwise alignment scores to the next positive semi-definite [29].
We suggested to implement the following actions: training in standards; review of maintenance plans; controls per line segment; design of a matrix of responsibilities; alignment between different functions of the company; and equipment maintenance.
For this comparison we used 24 genomes present in AFTOL for which entire genome data are available to calculate the distance matrix of the alignment from AFTOL [ 30].
Amino acid alignment using MAFFT (Katoh and Standley 2013) of 75 single-copy orthologs with less than 10% alignment gaps were concatenated, and the distance matrix of the merged alignment was calculated using ProtTest (Abascal et al. 2005).
In all calibrations, optimized branch lengths with their variance-covariance matrices of each alignment data were estimated for each gene partition (i.e., multiple loci analysis) with an F84 + G model (similar to the best model among available models in Multidivtime) using estbranches program.
Figure 1A shows the trace back matrix of a pairwise alignment of two simple POGs from species A and B. Several local alignments (above a user-defined threshold) are extracted from the trace back matrix.
Compute a distance matrix of the existing alignment consisting of N sequences.
The calculation procedure is as follows: Compute a distance matrix of the existing alignment consisting of N sequences.
The JTT (Jones, Taylor and Thornton) protein substitution matrix of the resulting alignment was determined using ProTest software [ 62].
