Sentence examples for matrix implemented from inspiring English sources
The coding sequence of the query gene is aligned to the sequence fragments flanking and including polymorphic sites from [35], [36] using the (ends-free) Needleman-Wunsch dynamic programming algorithm and the FULLMAT substitution matrix implemented in EMBOSS.
For African-Americans and Caucasians single locus genotypic tests of association (additive model) were performed with generalized estimating equations (GEE) using the independence correlation matrix implemented in SAS PROC GENMODD) statistical software version 9.1 (SAS Institute, Cary, NC).
The state-of-the-art method is a heuristic procedure that examines inter-cluster and intra-cluster distance distributions and gives a partition of the set of taxa in a phylogenetic tree, by considering the patristic distance matrix, implemented in a software named CTree [8].
To identify putative recombination events, third codon-position, ungapped nucleotide sequence alignments from each cluster were created using MEGA and maximum-likelihood trees were created using the HKY+gamma substitution matrix implemented in PAUP* v.4.0 (Sinauer Associates, Inc. Publishers, Sunderland Massachusetts).
Phylogenetic tree was reconstructed using the neighbor-joining method in which distance was estimated by JTT amino acid matrix implemented in MEGA 4.0 program [ 57].
In order to construct a scale-free network and identify important modules, we used a weighted adjacency matrix implemented in WGCNA.
CS is a new acquisition technique for sparse signals that can reduce the sampling rate drastically, as long as the matrix implementing the sensing mechanism satisfies the aforementioned properties.
Finally, the matrix C ∈ ℂ N w × N w is the diagonal matrix implementing the chirp modulation on this up-sampled grid and the matrix F = ( f i ) 1 ≤ i ≤ N w ∈ ℂ N w × N w stands for the discrete Fourier basis on the same grid.
end{aligned} (6) ({varvec{D}}) is the second-order finite-difference operator, controlling the second-order difference minimization of the model parameters (Aster et al. 2005), and ({varvec{W}}_i^m) is a reweighting matrix implementing the (L_1) minimization of the model parameters (Farquharson and Oldenburg 1998).
Isolation by distance was tested within each major mtDNA lineage using a Mantel test of correlation between genetic and geographic distance matrices implemented in the software package IBD [ 42].
The molecular evolutionary history of the Shiva superfamily toxins was reconstructed using Bayesian inference as implemented in MrBayes version 3.2.1 [ 89], using lset rates = invgamma with the prset aamodelpr = mixed command, which enables the program to optimize between the nine different amino acid substitution matrices implemented in MrBayes.
