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Exact(4)
It is shown in [48] that the δsup of a large signature matrix created with the method of Theorem 2 from a smaller one, is equal to the original matrix.
Principal Coordinate Analysis (PCoA) was performed to define the genetic relationships among detected populations on the basis of the genetic distance matrix created with GenAlEx.
The final distance matrix created with ClustalW2 was then used with the neighbor-joining method to construct the phylogenetic tree and the final tree was plotted as a phylogram.
The value of 'd', on the other hand, varies according to the distance matrix created with rank 'k', establishing the relations d=f(k) and c=f(f k)).
Similar(56)
The MTMM method uses a K-matrix, created with EMMA (Kang et al. 2008), to control for population structure.
The columns that follow are in groups of four, showing the results of K-Means and ASAP, using a trigrams frequency matrix created by SVD with 60 or nine singular values.
Three methods were used for phylogeny construction: 1) Maximum likelihood (ML) using RaxML [ 108] with the RtREV+G+F substitution model, 2) ML using PhyML with the WAG+G model [ 109], and 3) Neighbor joining (NJ) using NEIGHBOR in PHYLIP [ 110] and a distance matrix created in TREEPUZZLE [ 111] with the WAG+G substitution model.
A row matrix is created with respect to the straightened binary image.
A binary matrix was created with green (true) and red (false) placed for 4 conditions: (1) If syn/nonsyn variations are not present in the GMTV database.
A similarity matrix was created with all the scores and a representation of this network was generated in Cytoscape v2.6.1 [38] using the weighted spring-embedded layout which is based on a "force-directed" paradigm as implemented by Kamada and Kawai [39].
A random point generator populated the classifiable area with 1013 points, for which a matrix was created with the four GIS variable values.
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