Sentence examples for matrix compiled from from inspiring English sources

JTT is an accepted point mutation matrix compiled from the pairs of closely related proteins encoded in nuclear DNA.

We grouped TF using hierarchical clustering, according to an integrated matrix compiled from four types of data sources: a TFBS-TG scoring matrix, a TF-TG functional similarity matrix, a TF-TG expression correlation matrix and a TF-TG interaction matrix.

We used the empirical transition matrix compiled by Jones et al. [ 38].

The matrix U was compiled from an extensive list of known metabolic reactions obtained from the KEGG database [ 31] while the matrix X contained transport reactions in and out of the system for every metabolite contained within S and U. SMILEY therefore proposed what reactions, irrespective of organism, needed to be added to RECON 1 in order to fill a network gap.

Briefly, the 118 TF binding profiles (position-specific weight matrix, or PWM) were compiled from the literature [ 27, 74] and the JASPAR database [ 78], and converted into a format suitable for each software tool (Additional File 4).

The unrooted NJ tree was compiled from a distance matrix made from the ratios of the polymorphic genes with the R package phangorn [ 73].

To search for TFBS, a total of 867 vertebrate position weight matrix models (PWMs) of TFs were compiled from the TRANSFAC [ 53], JASPAR [ 54], and UniProbe [ 55] databases.

The asset liability matrix used in this paper has been compiled from the financial asset and liability tables of the annual FOF accounts.

Position weight matrices of 127 motifs of transcription factors binding sites (TFBS) compiled from literature were used as motif information and provided in File S8.

As the first method, "best estimate" damage probability matrices for each seismic zone are developed by combining expert opinion and the damage statistics compiled from the recent earthquakes occurred in Turkey.

(Statistics compiled from SBS).