Sentence examples for matrix and trees from inspiring English sources

The data matrix and trees have been deposited in TreeBASE (http://www.treebase.org; study number 12339).

The phylogenetic matrix and trees are available from Treebase (http://purl.org/phylo/treebase/phylows/study/TB2 S17255).

The data matrix and trees have been deposited in TreeBase ([ 28]; http://purl.org/phylo/treebase/phylows/study/TB2 S12505).

A file including the character matrix and trees obtained under unweighted analysis is included in.nex format within the article's Additional file 1.

The datasets (matrix and trees resulting from the phylogenetic analyses) supporting the results of this article are available in the TreeBase repository, http://purl.org/phylo/treebase/phylows/study/TB2 S14132.

After the maximum tree value had been obtained, the pruning process began in order to obtain optimum tree set, using the cost-complexity setting method, providing the balance between probability of misclassification calculation from risk matrix and tree complexity.

The results were plotted as a similarity matrix and tree showing the phylogenetic distances and relationships between the analysed strains.

Phylogenetic analyses were performed using Cas9/Csn1 sequences aligned with ClustalX2 (Larkin et al. 2007), and distance matrix and tree construction using Phylip 3.69 and MEGA 5.2.1 (Felsenstein 1989; Tamura et al. 2011).

In all MP analyses, multistate characters were treated as polymorphic, indel characters embedded in the sequence data matrix were treated as missing data (but were represented in an additional character matrix), and tree searches using PAUP [ 23] were heuristic using at least 200 random addition replicates and TBR branch-swapping.

All matrices and trees are available from TreeBASE (http://purl.org/phylo/treebase/phylows/study/TB2 S11444).

Targeted nuclear exon sequences, data matrices, and trees were submitted to Figshare (http://dx.doi.org/10.6084/m9.figshare.org/10.6084/m9.figshare