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Chromatographic matrices were from Amersham Biosciences (Uppsala, Sweden) (HIC, DEAE-Sephacell) and DEAE-Trisacryl M from BioSephra (Villeneuf, France).
Of these, 47 matrices were from the JASPAR database (http://jaspar.genereg.net) [ 35, 36] and 282 matrices were from the Universal PBM Resource for Oligonucleotide-Binding Evaluation (UniPROBE) database [ 37].
Fibrin matrices were from Sigma and BD Matrigel Basement Membrane Matrix was from BD Biosciences (San Jose, CA, USA).
Binding-site matrices were from four sources: Jaspar (Bryne et al., 2008 ), Transfac Public (Matys et al., 2003 ), Daniel Pollard's compilation of the DNase-fingerprinted sites in RedFly (Halfon et al., 2008 ), and directly from the primary literature (only these are listed in Table S2 ).
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Recoveries from different matrices are from 96 to 104%, depending on the sample investigated.
Anti-FLAG M2 antibody and the affinity matrix were from Sigma (A2220).
Anti-FLAG M2 antibody and affinity matrix were from Sigma Aldrich.
The 12-by-12 12-by-12 12-by-12e matrixis fromd measurementhe
Matrigel basement membrane matrix was from Becton Dickinson (Bedford, MA, USA).
This block matrix is from the large matrix of the Leontief inverse based on the domestic inter-regional IO table.
Here, the mesoporous matrix is from silica gel modified by linear chains of alkyldimethylchlorosilanes and water is the associated lyophobic liquid.
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