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Then, DNA matrices were concatenated to obtain a supermatrix.
Gene matrices were concatenated using WINCLADA v.1.00.08 [ 90].
All genes were aligned in Geneious [ 49] and matrices were concatenated in SequenceMatrix [ 50].
The 21 data matrices were concatenated with Geneious [ 41] and the entire edited sequence data set visually checked.
Some gene matrices were concatenated into gene groups (atp, pet, psa, psb, rpo, rpl, rps, and ycf3+4), whereas others were treated individually (accD, cemA, clpP, rbcL, and ycf2).
For each of these seven character trimming approaches as well as the initial (non-trimmed) multiple sequence alignment, the ten so-obtained character matrices were concatenated into a single character supermatrix with the software Concatenate [ 67].
Similar(53)
KOG distance matrices with correlation values higher than 0.50 when compared to the reference KOG distance matrix were concatenated, aligned, the poorly aligned regions removed, and a phylogenetic analysis was done by Maximum Likelihood (PHYML) [ 28].
Finally, data were reformatted in a matrix layout in which each row is the connectivity profile of a single seed to each of the considered cortical areas, and matrices for all subjects were concatenated in a single matrix, which is the input of the k-means algorithm for clustering.
Finally, the matrices of the three scored primer pairs were concatenated into a single binary matrix where individuals and bands were stored as lines and columns, respectively.
The ten Sanger-sequenced nuclear loci were concatenated into one matrix of 7214 bp of protein-coding and ribosomal DNA data, with no missing data for any taxon.
Eighteen COSII were concatenated; the data matrix contained 15,709 characters, 82% of these representing introns, with the total data set containing 4,022 variable sites of which 1,910 (12.2%) were parsimony informative.
More suggestions(15)
matrices were aligned
matrices were prepared
matrices were calculated
matrices were filtered
matrices were obtained
matrices were compared
matrices were arranged
matrices were selected
matrices were composed
matrices were employed
matrices were incorporated
matrices were loaded
matrices were used
matrices were converted
matrices were diagonalized
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