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Using these primary data, identification matrices were compiled for both rotated consonants and vowels, which represent the proportion of cases in which each rotated vowel or consonant (a row of the matrix) is identified with each unrotated vowel or consonant (the columns of the matrix).
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All the resulting transfers of associated inputs and outputs are made at the same time as the use and make matrices are compiled.
Using the NTSYS-pc version 2.02 K package [10], the transformed binary character matrix data are first transferred into the software data collection module, from which pairwise distance matrices are compiled.
To compare the accuracy and performance of MMMvII to those of the original MMM an evaluation data set comprised of pairs of distance matrices was compiled using the OMA database [ 16] http://www.omabrowser.com.
Following this, the revised individual matrixes were compiled to generate a rough thematic framework.
An initial binary data matrix was compiled for all individuals and dominant AFLP markers.
The 26 selected training matrices (e) were compiled in a unique ξ matrix.
Briefly, the 118 TF binding profiles (position-specific weight matrix, or PWM) were compiled from the literature [ 27, 74] and the JASPAR database [ 78], and converted into a format suitable for each software tool (Additional File 4).
Each reviewer completed the data extraction matrix separately, and review results were compiled into a single matrix for analysis.
Bared-teeth-face giver and receiver were entered into a sociometric matrix and dominance ranks were compiled with Matman 1.1.4 using the I&SI method (de Vries 1998).
To search for TFBS, a total of 867 vertebrate position weight matrix models (PWMs) of TFs were compiled from the TRANSFAC [ 53], JASPAR [ 54], and UniProbe [ 55] databases.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com