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To trim PPM matrices, we removed columns at each flank until two consecutive columns with information content greater than 0.25 were encountered.
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Prior to calculating a dissimilarity matrix, we removed outliers following the preprocessing step explained below.
To avoid matrix interference, we removed all signals below 2 kDa and peaks intensities were normalized to the total ion current of m/z between 2 kDa to 20 kDa.
Although we did retain these genes in the expression matrix pbefore module detection, we removed these genes in the observed modules before scoring.
Based upon this criterion, we removed 715 matrices to yield a set of 3663.
To further understand the anatomical distribution of these identified ions, we removed the matrix and histochemically stained the lung sections using conventional hematoxylin and eosin staining and scanned the slides using high definition digital scanning.
We removed the extra cellular matrix of root cells to produce protoplasts, which are able to initiate a process leading to plant regeneration.
The HapCUT algorithm considers the submatrix of the SNP matrix in which we remove all the columns corresponding to Homozygous SNPs and all the columns in which there are present more than two distinct bases (i.e. there must be at least a mistaken base).
First, we remove any prior knowledge on GO term relations (i.e. we remove matrix L 2 ).
It is only after these protective matrices were removed by treatment with HCl and HF that these compounds became evident.
Outliers identified by hierarchical clustering and/or dissimilarity matrices were removed.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com