We want to bring to attention that the channel correlation matrix used here is entirely different from the path covariance matrix used as ECM in (11).
The data matrix used here has a dimension of 10000 × 731, containing 2 years of daily clearness indices at all pixels.
The kernel matrix used here reflected epigenetic similarity between epiRILs based on their methylation profiles, and such epigenomic information might complement genomic information at the DNA level.
Simulations of larger datasets suggest that the addition of about 6 kb to the Pteropodidae combined matrix used here would probably allow to resolve all basal relationships of the family.
Although many matrices were tested, the weight matrix used here evaluated a match (A-U, G-U, C-G) and with a score of 4, a mismatch (A-A, C-C, G-G, U-U, A-C, A-G, U-C) with a score of -20, and assessed a gap penalty of 100.
The AComDim method, based on the multi-block analysis of ANOVA matrices, was used here to evaluate the impact of experimental factors on the responses from the different sensors tested.
While this model applies strictly to the luminophore:matrix combination used here the methodology can be applied to other luminescent based sensor systems.
Although simple pairwise comparisons usually cannot narrow down evolutionary events to specific branches, the matrix approach used here can detect differences between clades.
For GEBV prediction based on IBS relationships, G is G IBS. Two ways to set up the G IBS matrix were used here.
(b) Variables corresponding to the variable of interest are stored as row names of a local matrix, with [mkmat rownames]; this is an atypical application of matrices, which are used here to have the possibility to store a potentially large number of strings.
