This alignment is represented as a matrix to reconstruct a phylogenetic tree.
Starting from the solution that leads to a minimal value of s(n− k, r) over all r, we can trace back the dynamic programming matrix to reconstruct the haplotypes that minimize the MEC score.
PAML deletes sites in the ancestral sequence where any one sequence contains a gap in the MSA, whereas FastML uses a binary matrix to reconstruct indels and adds them back into regions of more highly conserved sequence.
In order to monitor time-varying fields, in [15], the authors employed low-rank matrix recovery to reconstruct the space-time map of the field.
The resulting similarity matrices were transformed into distance matrices and used to reconstruct trees by the neighbor joining method with MEGA v5.2.2.
The subspace projection approach was then applied wherein the first two dominant singular vectors of the 148 × 79 data matrix were used to reconstruct the wall subspace.
Given the sampled measurement matrix A, how to reconstruct the foreground and background becomes a key problem in the CS-based object detection.
The first two dominant singular vectors of the frequency vs. antenna raw data matrix were used to reconstruct the wall subspace.
To investigate the feasibility of replacing urinary epithelial cells with oral keratinocytes and transforming growth factor β (TGF-β 1 siRNA TGF-β 1cted fibroblasiRNAeeded on bladder acellular matransfected(BAMG) to reconstruct urethra.
If the width of the intervals is chosen such that there is at most 1 pixel per direction D i and per interval, this matrix allows us to reconstruct exactly the contour; it contains the radial coordinates of the contour in the system of pole {l c,m c }.
