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It is clear however that S' compounds 2 types of quantities that share neither an explicit mechanism nor metric, since indels should not be treated in the same way as amino acid replacements matrices in evolutionary models of change.
The 'common principal component' approach and resulting hierarchy of models have seen considerable use in the comparison of covariance matrices in evolutionary biology; see Houle et al. [ 41] for a discussion.
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The interactions between hosts and parasites can be expressed with two matrices (corresponding to a bi-matrix game in evolutionary game theory).
Pigliucci and Kaplan (2000, 2006) proposed a test protocol based on transition matrices in which probabilities of evolutionary change are specified under natural selection and under one or more competing constraint hypotheses, so as to test natural selection against constraint.
This strategy invokes PAML to calculate amino acid distances based on an empirical amino acid substitution rate matrix and accounts for variation in evolutionary rates among sites.
"I believed in evolutionary psychology.
He has a PhD in evolutionary genetics.
In evolutionary terms, it makes sense.
(1985) Morphometrics in Evolutionary Biology.
Has a PhD in evolutionary ecology.
But in evolutionary terms this is nonsense.
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