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We perform a genetic algorithm based optimization in order to modify the matrices generated with the procedures explained in (Livi et al., 2015).
2) If noise is present and P > d, then RESID SMD e(t), P)) > RESID SMD e(t), d)), since the matrices generated with the noise components are not diagonalizable commuting matrices.
Finally, we considered the fit of the AE model with Ph->E transmission to expected covariance matrices generated with parameter set 2 (ACE simplex with αk = βk = 0).
Checking the consistency of the stoichiometric matrices generated with active or inactive toggle button of such "likely" reactions may provide valuable heuristics for further experimental work.
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Figure 9 displays the crosscutting matrix generated with the data of the previous example.
In a second step, the matrix generated with CONSENSUS was used to search the upstream regions of all previously identified quorum-controlled genes.
We also used the distance matrix generated with Gegenees, from the evolutionary distance based on the similarity between the strains, to determine how well the similarity heatplot correlated with the phylogenetic relationships reported in the literature [ 1, 12].
The presence/absence matrix generated with the six primer combinations was imported in FAMD v. 1.1 [ 81] to assess genetic diversity between areas, regions, populations, crossing groups or genetic clusters.
Despite minor variations in quality in some clusters, the overall quality of the clusters did not differ from the performance of all algorithms on a distance matrix generated with a reduction in rank.
We compare age-stratified contact matrices extracted from the empirical contact networks with synthetic matrices generated by an algorithmic approach [8].
From Bayesian and ML inferences, these four matrices generated eight fully bifurcated trees with similar topology.
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