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Kinjo and Nishikawa [45] reported that the log-odds matrices constructed for 18 different levels of sequence identities from structure-based protein alignments have a characteristic dependence on time in the principal components of their eigenspectra.
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To build the matrices, each outlook has a utilization matrix constructed for it and then singular value decomposition (SVD) is performed, as to align the marginal distributions, using the utilization matrices.
On a matrix constructed for all variables used in the analysis, collinearity was observed between employment and gender (r=0.75; p<0.001), marital status and age at displacement (r=−0.36; p<0.001), education and age at displacement (r=−0.38; p<0.001), and food security and perceived availability of social support (r=−0.43; p<0.001).
Thereafter, hierarchical clustering was applied to this data using a correlation matrix constructed from EST frequencies for differentially expressed C. arabica and C. canephora contigs.
A stoichiometric matrix (S-matrix) was constructed for the reactions within a module by extracting the corresponding reaction columns from the S-matrix of hepEFM, and removing all dead-end metabolites without both a source and sink reaction.
The optimal correlation matrices are constructed for cases when the number of simulations (experiments) Nsim is less than or equal to the stochastic dimension, i.e. the number of random variables (factors) Nvar.
For TFBS consensus motifs of variable length, separate matrices were constructed for each motif length.
The phonological identities were averaged over all the repetitions of consonants and vowels in different contexts, and identification matrices were constructed for each subject.
To test the relationship between MSI and phylogenetic relatedness, multiple phylogenetic similarity matrices were constructed for all of the taxa examined, using recently published phylogenetic hypotheses [33] [43].
Separate phenotype-phenotype matrices were constructed for each query disease.
Separate design matrices were constructed for the combined FTLD group and for each syndromic subgroup.
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