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As the development set has been subsequently revised for a curated release, we provide the entire set of matrices as used in this report in Additional file 14.
The dCoxS uses relative entropy matrices in place of correlation matrices, as used by GSCA, and the correlation coefficient between the upper-diagonal elements of these matrices as a measure of their similarity.
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This algorithm allows us to compute the density matrix, as used in, e.g., the Kohn Sham iteration, and so obtain the electron density.
The segmentation is evaluated using the same experimental matrix as used in Table3, and the optimum configuration is verified to be the same.
To visualise the multivariate structure of the nematode genera assemblages, non-metric multi-dimensional scaling ordination (MDS) was performed based on the same Bray-Curtis similarity matrix as used for ANOSIM.
The HMM analysis was performed in MATLAB with the same transition matrix as used to learn the phastCons HMM for the UCSC Genome Browser (Kent et al. 2002).
The European Food Safety Authority has recommended that NMs in the food and feed area should ideally be characterized in five stages, i.e., as manufactured, as delivered for use in food or feed products, as present in the food and feed matrix, as used in toxicity testing, and as present in biological fluids and tissues (EFSA 2011).
The last part of the talk will present a case study of communication-avoiding sparse-dense matrix multiplication as used in graphical model structure learning.
The Q1K and Q2K methods were based on the same kinship matrix K as used for the K method.
The PK method was based on the same kinship matrix K as used for the K method.
Our methods rely on matrix calculus, as used by Caswell (2006, 2008, 2013, van Raalte and Caswell 2013).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com